Admin guide

Requirements

Quick installation can be done by running the rInstall.sh file in sudo mode and is dependant on the installPackages.r (These files are found in the epitools root folder)

Change into the epitools resource directory and make sure rInstall.sh and installPackages.r files exist in the folder the run

sudo bash rInstall.sh

For more details on installing R manually see below:

R (see http://cran.r-project.org/bin/linux/ubuntu/README)
Main R applications to install are r-base, r-base-dev and r-base-code
For the "Cairo" package two applications need to be installed as well libcairo2-dev and libxt-dev

Once R is installed start R as root (command: sudo R) then install the following packages:

Info

Installation of packages may be done with this command within R prompt > install.packages("package1", "package2", "package3", ... , "packageX)

Cairo
DAAG
epitools
exact2x2
gplots
Hmisc
MASS
mc2d
PK
pROC
RColorBrewer
survival
vcd
zoo